pyPDAF.PDAF.localomi_put_state_lnetf_nondiagR

pyPDAF.PDAF.localomi_put_state_lnetf_nondiagR()

LNETF for a single DA step using non-diagnoal observation error covariance matrix without post-processing, distributing analysis, and setting next observation step.

See pyPDAF.PDAF.localomi_put_state() for using diagnoal observation error covariance matrix. The non-linear filter is proposed in [1]. The filter type is set in pyPDAF.PDAF.init().

Compared to pyPDAF.PDAF.omi_assimilate_lnetf_nondiagR(), this function has no get_state() call. This means that the analysis is not post-processed, and distributed to the model forecast by user-supplied functions. The next DA step will not be assigned by user-supplied functions as well. This function is typically used when there are not enough CPUs to run the ensemble in parallel, and some ensemble members have to be run serially. The pyPDAF.PDAF.get_state() function follows this function call to ensure the sequential DA.

This function should be called at each model time step.

User-supplied functions are executed in the following sequence:

  1. py__collect_state_pdaf

  2. py__prepoststep_state_pdaf

  3. py__init_n_domains_p_pdaf

  4. py__init_dim_obs_pdaf

  5. py__obs_op_pdaf (for each ensemble member)

  6. loop over each local domain:

    1. py__init_dim_l_pdaf

    2. py__init_dim_obs_l_pdaf

    3. py__likelihood_l_pdaf

    4. core DA algorithm

References

Parameters:

  • py__collect_state_pdaf (Callable[dim_p:int, state_p : ndarray[tuple[dim_p], np.float64]]) –

    Routine to collect a state vector

    Callback Parameters
    • dim_pint

      • pe-local state dimension

    • state_pndarray[tuple[dim_p], np.float64]

      • local state vector

    Callback Returns
    • state_pndarray[tuple[dim_p], np.float64]

      • local state vector

  • py__init_dim_obs_pdaf (Callable[step:int, dim_obs_p:int]) –

    Initialize dimension of full observation vector

    Callback Parameters
    • stepint

      • current time step

    • dim_obs_pint

      • dimension of observation vector

    Callback Returns
    • dim_obs_pint

      • dimension of observation vector

  • py__obs_op_pdaf (Callable[step:int, dim_p:int, dim_obs_p:int, state_p : ndarray[tuple[dim_p], np.float64], m_state_p : ndarray[tuple[dim_obs_p], np.float64]]) –

    Full observation operator

    Callback Parameters
    • stepint

      • Current time step

    • dim_pint

      • Size of state vector (local part in case of parallel decomposed state)

    • dim_obs_pint

      • Size of observation vector

    • state_pndarray[tuple[dim_p], np.float64]

      • Model state vector

    • m_state_pndarray[tuple[dim_obs_p], np.float64]

      • Observed state vector (i.e. the result after applying the observation operator to state_p)

    Callback Returns
    • m_state_pndarray[tuple[dim_obs_p], np.float64]

      • Observed state vector (i.e. the result after applying the observation operator to state_p)

  • py__prepoststep_pdaf (Callable[step:int, dim_p:int, dim_ens:int, dim_ens_p:int, dim_obs_p:int, state_p : ndarray[tuple[dim_p], np.float64], uinv : ndarray[tuple[dim_ens-1, dim_ens-1], np.float64], ens_p : ndarray[tuple[dim_p, dim_ens], np.float64], flag:int]) –

    User supplied pre/poststep routine

    Callback Parameters
    • stepint

      • current time step (negative for call after forecast)

    • dim_pint

      • pe-local state dimension

    • dim_ensint

      • size of state ensemble

    • dim_ens_pint

      • pe-local size of ensemble

    • dim_obs_pint

      • pe-local dimension of observation vector

    • state_pndarray[tuple[dim_p], np.float64]

      • pe-local forecast/analysis state (the array ‘state_p’ is not generally not initialized in the case of seik. it can be used freely here.)

    • uinvndarray[tuple[dim_ens-1, dim_ens-1], np.float64]

      • inverse of matrix u

    • ens_pndarray[tuple[dim_p, dim_ens], np.float64]

      • pe-local state ensemble

    • flagint

      • pdaf status flag

    Callback Returns
    • state_pndarray[tuple[dim_p], np.float64]

      • pe-local forecast/analysis state (the array ‘state_p’ is not generally not initialized in the case of seik. it can be used freely here.)

    • uinvndarray[tuple[dim_ens-1, dim_ens-1], np.float64]

      • inverse of matrix u

    • ens_pndarray[tuple[dim_p, dim_ens], np.float64]

      • pe-local state ensemble

  • py__init_n_domains_p_pdaf (Callable[step:int, n_domains_p:int]) –

    Provide number of local analysis domains

    Callback Parameters
    • stepint

      • current time step

    • n_domains_pint

      • pe-local number of analysis domains

    Callback Returns
    • n_domains_pint

      • pe-local number of analysis domains

  • py__init_dim_l_pdaf (Callable[step:int, domain_p:int, dim_l:int]) –

    Init state dimension for local ana. domain

    Callback Parameters
    • stepint

      • current time step

    • domain_pint

      • current local analysis domain

    • dim_lint

      • local state dimension

    Callback Returns
    • dim_lint

      • local state dimension

  • py__init_dim_obs_l_pdaf (Callable[domain_p:int, step:int, dim_obs_f:int, dim_obs_l:int]) –

    Initialize local dimimension of obs. vector

    Callback Parameters
    • domain_pint

      • index of current local analysis domain

    • stepint

      • current time step

    • dim_obs_fint

      • full dimension of observation vector

    • dim_obs_lint

      • local dimension of observation vector

    Callback Returns
    • dim_obs_lint

      • local dimension of observation vector

  • py__likelihood_l_pdaf (Callable[domain_p:int, step:int, dim_obs_l:int, obs_l : ndarray[tuple[dim_obs_l], np.float64], resid_l : ndarray[tuple[dim_obs_l], np.float64], likely_l:float]) –

    Compute likelihood and apply localization

    Callback Parameters
    • domain_pint

      • Index of current local analysis domain

    • stepint

      • Current time step

    • dim_obs_lint

      • Number of local observations at current time step (i.e. the size of the local observation vector)

    • obs_lndarray[tuple[dim_obs_l], np.float64]

      • Local vector of observations

    • resid_lndarray[tuple[dim_obs_l], np.float64]

      • nput vector holding the local residual

    • likely_lfloat

      • Output value of the local likelihood

    Callback Returns
    • likely_lfloat

      • Output value of the local likelihood

  • outflag (int) – Status flag

Returns:

outflag – Status flag

Return type:

int